Appendix A — Useful resources

Analyzing NGS data can be a complex process, especially with the rise of multi-omics approaches.
Here is a list of resources we thought would be useful for people interested in going deeper in the analysis of NGS data.

General bioinformatics

  • A comprehensive overview of the different types of bioinformatic analyses, divided in 4 fundamental modules: LINK

R/Bioconductor

  • The excellent R guide for beginners, by Emmanuel Paradis: PDF
  • The 150+ pages comprehensive book to learn everything about Bioconductor. This ebook has been published by Kasper D. Hansen and is freely available under the CC BY-NC-SA 4.0 license: PDF
  • A digested PowerPoint summarizing two R/Bioconductor fundamental classes: GRanges and *Experiment classes

Scientific readings

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