Package index • HiContacts

All functions
`Contacts()`	Contacts
`HiContacts-plots`	HiContacts plotting functionalities
`distanceLaw()` `localDistanceLaw()`	Compute the law of distance-dependent contact frequency, a.k.a. P(s)
`aggregate(<HiCExperiment>)` `detrend()` `autocorrelate()` `divide()` `merge(<HiCExperiment>,<HiCExperiment>)` `despeckle()` `boost()` `coarsen()` `normalize(<HiCExperiment>)` `subsample()`	HiContacts arithmetics functionalities
`cisTransRatio()`	cisTransRatio
`getCompartments()`	Contact map compartments
`getDiamondInsulation()` `getBorders()`	Contact map insulation
`getLoops()`	Finding loops in contact map
`bwrColors()` `bbrColors()` `bgrColors()` `afmhotrColors()` `coolerColors()` `rainbowColors()`	Matrix palettes
`plot4C()`	Plotting virtual 4C profiles
`plotMatrix()` `montage()`	Plotting a contact matrix
`plotPs()` `plotPsSlope()`	Plotting a P(s) distance law
`plotSaddle()`	Plotting saddle plots
`plotScalogram()`	Plotting scalograms
`scalogram()`	Compute a scalogram of contacts
`coverage(<HiCExperiment>)`	Aligning tracks with HiCExperiment objects
`virtual4C()`	Computing virtual 4C profiles

Reference