Plotting saddle plots

Plotting saddle plots

plotSaddle(
  x,
  nbins = 50,
  limits = c(-1, 1),
  plotBins = FALSE,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

x

a HiCExperiment object with a stored eigens metadata

nbins

Number of bins to use to discretize the eigenvectors

limits

limits for color map being used

plotBins

Whether to plot the distribution of bins on top of the plot

BPPARAM

a BiocParallel registered method

Value

ggplot