Plotting saddle plots — plotSaddle • HiContacts

Plotting saddle plots

plotSaddle(
  x,
  nbins = 50,
  limits = c(-1, 1),
  plotBins = FALSE,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

x: a HiCExperiment object with a stored eigens metadata
nbins: Number of bins to use to discretize the eigenvectors
limits: limits for color map being used
plotBins: Whether to plot the distribution of bins on top of the plot
BPPARAM: a BiocParallel registered method

Value

ggplot