Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps,
colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates,
colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse,
rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans,
rowWeightedMedians, rowWeightedSds, rowWeightedVars
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted,
lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames, sapply, setdiff, table, tapply, union, unique,
unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
expand.grid, I, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
The following object is masked from 'package:MatrixGenerics':
rowMedians
The following objects are masked from 'package:matrixStats':
anyMissing, rowMedians
ββ Attaching core tidyverse packages ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ tidyverse 2.0.0 ββ
β dplyr 1.1.4 β readr 2.1.5
β forcats 1.0.0 β stringr 1.5.1
β ggplot2 3.5.1 β tibble 3.2.1
β lubridate 1.9.3 β tidyr 1.3.1
β purrr 1.0.2
ββ Conflicts ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ tidyverse_conflicts() ββ
β lubridate::%within%() masks IRanges::%within%()
β dplyr::collapse() masks IRanges::collapse()
β dplyr::combine() masks Biobase::combine(), BiocGenerics::combine()
β dplyr::count() masks matrixStats::count()
β dplyr::desc() masks IRanges::desc()
β tidyr::expand() masks S4Vectors::expand()
β dplyr::filter() masks stats::filter()
β dplyr::first() masks S4Vectors::first()
β dplyr::lag() masks stats::lag()
β ggplot2::Position() masks BiocGenerics::Position(), base::Position()
β purrr::reduce() masks GenomicRanges::reduce(), IRanges::reduce()
β dplyr::rename() masks S4Vectors::rename()
β lubridate::second() masks S4Vectors::second()
β lubridate::second<-() masks S4Vectors::second<-()
β dplyr::slice() masks IRanges::slice()
βΉ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
Rows: 1626642 Columns: 4
ββ Column specification ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
Delimiter: "\t"
chr (3): Gene, Gene name, Cell type
dbl (1): nTPM
βΉ Use `spec()` to retrieve the full column specification for this data.
βΉ Specify the column types or set `show_col_types = FALSE` to quiet this message.
