Function reference • periodicDNA

Main functions
`getPeriodicity()`	A function to compute k-mer periodicity in sequence(s).
`getPeriodicityTrack()`	Function to generate a k-mer periodicity track
Plotting functions
`plotAggregateCoverage()`	A function to plot aggregated signals over sets of GRanges
`plotPeriodicityResults()`	Plot the output of getPeriodicity()
Utilities
`ce11_ATACseq`	ce11_ATACseq
`ce11_TSSs`	ce11_TSSs
`ce11_WW_10bp`	ce11_WW_10bp
`ce11_all_REs`	ce11_all_REs
`ce11_proms`	ce11_proms
`ce11_proms_seqs`	ce11_proms_seqs
`getPeriodicity()`	A function to compute k-mer periodicity in sequence(s).
`getPeriodicityTrack()`	Function to generate a k-mer periodicity track
`getPeriodicityWithIterations()`	A function to compute PSDs with iterations
`plotAggregateCoverage()`	A function to plot aggregated signals over sets of GRanges
`plotPeriodicityResults()`	Plot the output of getPeriodicity()
`setUpBPPARAM()`	setUpBPPARAM
`theme_ggplot2()`	Personal ggplot2 theming function, adapted from roboto-condensed at https://github.com/hrbrmstr/hrbrthemes/
Data
`ce11_all_REs`	ce11_all_REs
`ce11_proms`	ce11_proms
`ce11_proms_seqs`	ce11_proms_seqs
`ce11_TSSs`	ce11_TSSs
`ce11_WW_10bp`	ce11_WW_10bp
`ce11_ATACseq`	ce11_ATACseq
Internal functions

Reference