Sample of sequences of promoters annotated in C. elegans (ce11) according to Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv.

data(ce11_proms_seqs)

Format

DNAStringSet

Source

BiorXiv

References

Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv. (DOI)

Examples

data(ce11_proms_seqs) head(ce11_proms_seqs)
#> DNAStringSet object of length 6: #> width seq names #> [1] 300 CACCATTTCAGATTTTTCGGGCT...AAAGATTACAACAAAAAAGAAGA Y74C9A.1_chrI_432... #> [2] 300 AGCTTGTATTTTAATTTTTTGTT...ATTTAATTTACACATTTTTCCAA W04C9.4_chrI_4616... #> [3] 300 CACTCATTTTTGTGTTTTATTGG...CAAAAACATGAAAATCCAATCTA icd-2_chrI_535376... #> [4] 300 GAAAATAATATTGGAGTAATTTT...ATTTACAGGTAGCAATGTATGGG Y95B8A.8_chrI_853... #> [5] 300 AAAACTGCTGTCCCTGCGAAACA...GTCTTCTCCTCCTTCTTGAGCTG Y34D9A.3_chrI_103... #> [6] 300 TTGAAAACTCAAATAATTCACCA...GCGATGCGTTTAATTAAGTTTTG smo-1_chrI_134009...