ce11_proms_seqs — ce11_proms_seqs • periodicDNA

Sample of sequences of promoters annotated in C. elegans (ce11) according to Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv.

data(ce11_proms_seqs)

Format

DNAStringSet

Source

BiorXiv

References

Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv. (DOI)

Examples

data(ce11_proms_seqs)
head(ce11_proms_seqs)
#> DNAStringSet object of length 6:
#>     width seq                                               names               
#> [1]   300 CACCATTTCAGATTTTTCGGGCT...AAAGATTACAACAAAAAAGAAGA Y74C9A.1_chrI_432...
#> [2]   300 AGCTTGTATTTTAATTTTTTGTT...ATTTAATTTACACATTTTTCCAA W04C9.4_chrI_4616...
#> [3]   300 CACTCATTTTTGTGTTTTATTGG...CAAAAACATGAAAATCCAATCTA icd-2_chrI_535376...
#> [4]   300 GAAAATAATATTGGAGTAATTTT...ATTTACAGGTAGCAATGTATGGG Y95B8A.8_chrI_853...
#> [5]   300 AAAACTGCTGTCCCTGCGAAACA...GTCTTCTCCTCCTTCTTGAGCTG Y34D9A.3_chrI_103...
#> [6]   300 TTGAAAACTCAAATAATTCACCA...GCGATGCGTTTAATTAAGTTTTG smo-1_chrI_134009...