ce11_proms

Source: R/data.R

Promoters annotated in C. elegans (ce11) according to Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv.

data(ce11_proms)

Format

GRanges

Source

BiorXiv

References

Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv. (DOI)

Examples

data(ce11_proms)
table(ce11_proms$which.tissues)

#> 
#>                               Germline                                Neurons 
#>                                   1098                                    889 
#>                                 Muscle                                 Hypod. 
#>                                    984                                   1440 
#>                                Intest.                       Germline_Neurons 
#>                                   1512                                     37 
#>                        Germline_Muscle                        Germline_Hypod. 
#>                                     43                                     26 
#>                       Germline_Intest.                         Neurons_Muscle 
#>                                     25                                    414 
#>                         Neurons_Hypod.                        Neurons_Intest. 
#>                                     39                                     46 
#>                          Muscle_Hypod.                         Muscle_Intest. 
#>                                    174                                     80 
#>                         Hypod._Intest.                Germline_Neurons_Muscle 
#>                                    454                                     21 
#>                Germline_Neurons_Hypod.               Germline_Neurons_Intest. 
#>                                      5                                      5 
#>                 Germline_Muscle_Hypod.                Germline_Muscle_Intest. 
#>                                      8                                      3 
#>                Germline_Hypod._Intest.                  Neurons_Muscle_Hypod. 
#>                                      9                                     85 
#>                 Neurons_Muscle_Intest.                 Neurons_Hypod._Intest. 
#>                                    113                                     43 
#>                  Muscle_Hypod._Intest.         Germline_Neurons_Muscle_Hypod. 
#>                                    266                                     25 
#>        Germline_Neurons_Muscle_Intest.        Germline_Neurons_Hypod._Intest. 
#>                                     20                                      6 
#>         Germline_Muscle_Hypod._Intest.          Neurons_Muscle_Hypod._Intest. 
#>                                     60                                      0 
#> Germline_Neurons_Muscle_Hypod._Intest.                                   Soma 
#>                                      0                                    652 
#>                                  Ubiq.                           Ubiq.-Biased 
#>                                   2295                                   1281 
#>                           Unclassified                                    Low 
#>                                   4944                                    356