A function to plot a computed VmatList — plotVmat.VmatList • VplotR

The plotVmat.VmatList() method forwards the Vmat to plotVmat.default().

# S3 method for VmatList
plotVmat(x, nrow = NULL, ncol = NULL, dir = "v", ...)

Arguments

x: A VmatList (output of plotVmat.list())
nrow: Integer, how many rows in facet?
ncol: Integer, how many cols in facet?
dir: str, direction of facets?
...: additional parameters

Value

A Vmat ggplot

Examples

data(bam_test)
data(ce11_proms)
list_params <- list(
    'germline' = list(
        bam_test,
        ce11_proms[ce11_proms$which.tissues == 'Germline']
    ),
    'muscle' = list(
        bam_test,
        ce11_proms[ce11_proms$which.tissues == 'Muscle']
    )
)
V <- plotVmat(
    list_params,
    normFun = 'libdepth+nloci', 
    roll = 5
)
#> - Processing sample 1/2
#> - Processing sample 2/2