A function to generate a Vplot

See individual methods for further detail

plotVmat(x, ...)

Arguments

x

GRanges or list or Vmat

...

additional parameters

Value

A Vmat ggplot

Examples

data(bam_test)
data(ce11_proms)
V <- plotVmat(
    bam_test,
    ce11_proms,
    normFun = 'libdepth+nloci'
)
#> Computing V-mat
#> Normalizing the matrix
#> Computing raw library depth
#> Dividing Vmat by its number of loci
#> Smoothing the matrix