See individual methods for further detail

plotVmat(x, ...)

Arguments

x

GRanges or list or Vmat

...

additional parameters

Value

A Vmat ggplot

Examples

data(bam_test) data(ce11_proms) V <- plotVmat( bam_test, ce11_proms, normFun = 'libdepth+nloci' )
#> Computing V-mat
#> Normalizing the matrix
#> Computing raw library depth
#> Dividing Vmat by its number of loci
#> Smoothing the matrix