A function to plot a computed Vmat

The plotVmat.Vmat() method forwards the Vmat to plotVmat.default().

# S3 method for Vmat
plotVmat(x, ...)

Arguments

x

A computed Vmat (ideally, should be normalized)

...

additional parameters

Value

A Vmat ggplot

Examples

data(bam_test)
data(ce11_proms)
V <- plotVmat(
    bam_test,
    ce11_proms,
    normFun = 'libdepth+nloci', 
    return_Vmat = TRUE
)
#> Computing V-mat
#> Normalizing the matrix
#> Computing raw library depth
#> Dividing Vmat by its number of loci
#> Smoothing the matrix
plotVmat(V)