Promoters annotated in C. elegans (ce11) according to Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv.
data(ce11_proms)An object of class "GRanges".
Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv. (DOI)
data(ce11_proms)
table(ce11_proms$which.tissues)
#>
#> Germline Neurons
#> 1098 889
#> Muscle Hypod.
#> 984 1440
#> Intest. Germline_Neurons
#> 1512 37
#> Germline_Muscle Germline_Hypod.
#> 43 26
#> Germline_Intest. Neurons_Muscle
#> 25 414
#> Neurons_Hypod. Neurons_Intest.
#> 39 46
#> Muscle_Hypod. Muscle_Intest.
#> 174 80
#> Hypod._Intest. Germline_Neurons_Muscle
#> 454 21
#> Germline_Neurons_Hypod. Germline_Neurons_Intest.
#> 5 5
#> Germline_Muscle_Hypod. Germline_Muscle_Intest.
#> 8 3
#> Germline_Hypod._Intest. Neurons_Muscle_Hypod.
#> 9 85
#> Neurons_Muscle_Intest. Neurons_Hypod._Intest.
#> 113 43
#> Muscle_Hypod._Intest. Germline_Neurons_Muscle_Hypod.
#> 266 25
#> Germline_Neurons_Muscle_Intest. Germline_Neurons_Hypod._Intest.
#> 20 6
#> Germline_Muscle_Hypod._Intest. Neurons_Muscle_Hypod._Intest.
#> 60 0
#> Germline_Neurons_Muscle_Hypod._Intest. Soma
#> 0 652
#> Ubiq. Ubiq.-Biased
#> 2295 1281
#> Unclassified Low
#> 4944 356