Regulatory elements annotated in C. elegans (ce11) according to Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv.
data(ce11_all_REs)GRanges
Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv. (DOI)
data(ce11_all_REs)
table(ce11_all_REs$regulatory_class)
#>
#> fwd-promoter rev-promoter bidirect-promoter putative_enhancer
#> 6616 6480 2181 20271
#> unassigned_promoter pseudogene_promoter non-coding_RNA other_element
#> 2244 326 831 8565
table(ce11_all_REs$which.tissues)
#>
#> Germline Neurons
#> 2184 2728
#> Muscle Hypod.
#> 2962 3468
#> Intest. Germline_Neurons
#> 2852 104
#> Germline_Muscle Germline_Hypod.
#> 169 64
#> Germline_Intest. Neurons_Muscle
#> 52 1145
#> Neurons_Hypod. Neurons_Intest.
#> 102 78
#> Muscle_Hypod. Muscle_Intest.
#> 411 178
#> Hypod._Intest. Germline_Neurons_Muscle
#> 812 56
#> Germline_Neurons_Hypod. Germline_Neurons_Intest.
#> 7 12
#> Germline_Muscle_Hypod. Germline_Muscle_Intest.
#> 27 61
#> Germline_Hypod._Intest. Neurons_Muscle_Hypod.
#> 24 187
#> Neurons_Muscle_Intest. Neurons_Hypod._Intest.
#> 208 66
#> Muscle_Hypod._Intest. Germline_Neurons_Muscle_Hypod.
#> 511 81
#> Germline_Neurons_Muscle_Intest. Germline_Neurons_Hypod._Intest.
#> 69 21
#> Germline_Muscle_Hypod._Intest. Neurons_Muscle_Hypod._Intest.
#> 186 0
#> Germline_Neurons_Muscle_Hypod._Intest. Soma
#> 0 956
#> Ubiq. Ubiq.-Biased
#> 2918 2506
#> Unclassified Low
#> 20478 1831