A sample of ATAC-seq fragments from individual worm tissues (Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv)

data(ATAC_ce11_Serizay2020)

Format

An object of class "list".

Examples

data(ATAC_ce11_Serizay2020)
ATAC_ce11_Serizay2020
#> $Germline
#> GRanges object with 462371 ranges and 0 metadata columns:
#>            seqnames            ranges strand
#>               <Rle>         <IRanges>  <Rle>
#>        [1]     chrI           426-514      +
#>        [2]     chrI         3588-3854      +
#>        [3]     chrI         3640-3798      +
#>        [4]     chrI         3650-3694      +
#>        [5]     chrI         3732-3863      +
#>        ...      ...               ...    ...
#>   [462367]     chrX 17712277-17712469      -
#>   [462368]     chrX 17712279-17712342      -
#>   [462369]     chrX 17712282-17712565      -
#>   [462370]     chrX 17712285-17712384      -
#>   [462371]     chrX 17712287-17712576      -
#>   -------
#>   seqinfo: 7 sequences from an unspecified genome; no seqlengths
#> 
#> $Neurons
#> GRanges object with 367935 ranges and 0 metadata columns:
#>            seqnames            ranges strand
#>               <Rle>         <IRanges>  <Rle>
#>        [1]     chrI         4011-4241      +
#>        [2]     chrI         7397-7614      +
#>        [3]     chrI       11279-11502      +
#>        [4]     chrI       12744-12819      +
#>        [5]     chrI       14381-14433      +
#>        ...      ...               ...    ...
#>   [367931]     chrX 17687948-17687982      -
#>   [367932]     chrX 17699614-17699853      -
#>   [367933]     chrX 17706798-17706923      -
#>   [367934]     chrX 17708264-17708347      -
#>   [367935]     chrX 17709920-17710007      -
#>   -------
#>   seqinfo: 7 sequences from an unspecified genome; no seqlengths
#>