A sample of ATAC-seq fragments from individual worm tissues (Serizay et al. 2020, "Tissue-specific profiling reveals distinctive regulatory architectures for ubiquitous, germline and somatic genes", BiorXiv)
data(ATAC_ce11_Serizay2020)An object of class "list".
data(ATAC_ce11_Serizay2020)
ATAC_ce11_Serizay2020
#> $Germline
#> GRanges object with 462371 ranges and 0 metadata columns:
#> seqnames ranges strand
#> <Rle> <IRanges> <Rle>
#> [1] chrI 426-514 +
#> [2] chrI 3588-3854 +
#> [3] chrI 3640-3798 +
#> [4] chrI 3650-3694 +
#> [5] chrI 3732-3863 +
#> ... ... ... ...
#> [462367] chrX 17712277-17712469 -
#> [462368] chrX 17712279-17712342 -
#> [462369] chrX 17712282-17712565 -
#> [462370] chrX 17712285-17712384 -
#> [462371] chrX 17712287-17712576 -
#> -------
#> seqinfo: 7 sequences from an unspecified genome; no seqlengths
#>
#> $Neurons
#> GRanges object with 367935 ranges and 0 metadata columns:
#> seqnames ranges strand
#> <Rle> <IRanges> <Rle>
#> [1] chrI 4011-4241 +
#> [2] chrI 7397-7614 +
#> [3] chrI 11279-11502 +
#> [4] chrI 12744-12819 +
#> [5] chrI 14381-14433 +
#> ... ... ... ...
#> [367931] chrX 17687948-17687982 -
#> [367932] chrX 17699614-17699853 -
#> [367933] chrX 17706798-17706923 -
#> [367934] chrX 17708264-17708347 -
#> [367935] chrX 17709920-17710007 -
#> -------
#> seqinfo: 7 sequences from an unspecified genome; no seqlengths
#>