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PairsFile S4 class

Source: R/PairsFile-class.R, R/PairsFile-methods.R
PairsFile-class.Rd

The PairsFile class describes a BiocFile object, pointing to the location of pairs file, typically generated by HiCool::HiCool().

PairsFile methods

Arguments

x

Path to a pairs file

See also

CoolFile(), HicFile(), HicproFile()

Examples

pairsPath <- HiContactsData::HiContactsData('yeast_wt', 'pairs.gz')
#> see ?HiContactsData and browseVignettes('HiContactsData') for documentation
#> loading from cache
pf <- PairsFile(pairsPath)
pf
#> PairsFile object
#> resource: /github/home/.cache/R/ExperimentHub/190524de862e_7753 
pairsFile(pf)
#>                                                  EH7703 
#> "/github/home/.cache/R/ExperimentHub/190524de862e_7753"