DNAZooData is a data package giving programmatic access to Hi-C contact files uniformly processed by the DNA Zoo consortium.
The DNAZooData() function provides a gateway to DNA Zoo-hosted Hi-C files, including contact matrices in .hic, genome assemblies in .fastq and accessory metadata, for individual species
library(DNAZooData)
head(DNAZooData())
DNAZooData(species = 'Aedes_aegypti')HiCExperiment ecosystem
DNAZooData is integrated within the HiCExperiment ecosystem in Bioconductor. Read more about the HiCExperiment class and handling Hi-C data in R here.
- HiCExperiment: Parsing Hi-C files in R
- HiCool: End-to-end integrated workflow to process fastq files into .cool and .pairs files
- HiContacts: Investigating Hi-C results in R
- HiContactsData: Data companion package
- fourDNData: Gateway package to 4DN-hosted Hi-C experiments
- DNAZooData: Gateway package to DNA Zoo-hosted Hi-C experiments and genome assemblies