Turn a GInteractions object into a tibble

as_tibble() returns the interactions of a GInteractions object as a tibble: one row per interaction, with the coordinates of both anchors (seqnames1, start1, end1, width1, strand1, then the same for the second anchor) followed by the metadata columns. It is the reverse of as_ginteractions().

Usage

# S3 method for class 'GInteractions'
as_tibble(x, ...)

Arguments

x

A GInteractions object.

...

Passed to tibble::as_tibble().

Value

A tibble.

Examples

gi <- read.table(text = "
chr1 11 20 chr1 21 30 + +
chr1 11 20 chr1 51 55 + +
chr1 11 30 chr2 51 60 - -",
col.names = c(
  "seqnames1", "start1", "end1", 
  "seqnames2", "start2", "end2", "strand1", "strand2")
) |> 
  as_ginteractions()
gi$type <- c("cis", "cis", "trans")
as_tibble(gi)
#> # A tibble: 3 × 11
#>   seqnames1 start1  end1 width1 strand1 seqnames2 start2  end2 width2 strand2
#>   <fct>      <int> <int>  <int> <fct>   <fct>      <int> <int>  <int> <fct>  
#> 1 chr1          11    20     10 +       chr1          21    30     10 +      
#> 2 chr1          11    20     10 +       chr1          51    55      5 +      
#> 3 chr1          11    30     20 -       chr2          51    60     10 -      
#> # ℹ 1 more variable: type <chr>