Papers

Chromatin is dispensable for bacterial life

Villain, Hocher, Serizay, Whilding, Montoya, Shliaha, et al.

bioRxivPreprint•DOI

The cell cycle variant in multiciliated cells incorporates 2 centriole biogenesis cycles

Boudjema, Balagué, Jewett, Serizay, LoMastro, Mercey, et al.

eLife•DOI•PDF

Quand une cellule eucaryote adopte un chromosome bactérien

Meneu, Serizay, and Koszul

médecine/sciencesCommentary•DOI•PDF

Synthetic chromosomes for 3D functional genomics: from principles to AI-guided design

Perrot, Serizay, and Koszul

Current Opinion in Genetics & DevelopmentReview•DOI•PDF

FOXJ1 transcriptional targets in human airway cells and impaired multiciliogenesis in FOXJ1-associated primary ciliary dyskinesia

Thomas † & Serizay †, Mani, Couvet, Papon, Tamalet, et al.

American Journal of Respiratory Cell and Molecular Biology•DOI•PDF

Orchestrating Microbiome Analysis with Bioconductor

Borman, Benedetti, Muluh, Raulo, Valderrama, Sannikov, et al.

bioRxivPreprint•DOI

Multi-modal data integration for machine learning applications

Serizay, and Koszul

bioRxivPreprint•DOI

Softwaremomics

Phages with a broad host range are common across ecosystems

Bignaud, Conti, Thierry, Serizay, Labadie, Poulain, et al.

Nature Microbiology•DOI•PDF•Supp.

High-resolution map of the Plasmodium falciparum genome reveals MORC/ApiAP2-mediated links between distant, functionally related genes

Singh † & Serizay † & Couble †, Cabahug, Rosa, Chen, et al.

Nature Microbiology•DOI•PDF

Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

Meneu † & Chapard † & Serizay †, Westbrook, Routhier, Ruault, et al.

Science•DOI•PDF•Supp.

Cyclin O controls entry into the cell-cycle variant required for multiciliated cell differentiation

Khoury Damaa, Serizay, Balague, Boudjema, Faucourt, Delgehyr, et al.

Cell Reports•DOI•PDF•Supp.

Cyclin switch tailors a cell cycle variant to orchestrate multiciliogenesis

Serizay, Khoury Damaa, Boudjema, Balagué, Faucourt, Delgehyr, et al.

Cell Reports•DOI•PDF•Supp.

Epigenomics coverage data extraction and aggregation in R with tidyCoverage

Serizay, and Koszul

Bioinformatics•DOI•PDF

SoftwaretidyCoverage

The tidyomics ecosystem: enhancing omic data analyses

Hutchison † & Keyes †, Crowell, Serizay, Soneson, Davis, et al.

Nature Methods•DOI•PDF

Softwareplyinteractions

Orchestrating chromosome conformation capture analysis with Bioconductor

Serizay, Matthey-Doret, Bignaud, Baudry, and Koszul

Nature Communications•DOI•PDF•Supp.

SoftwareHiCoolHiCExperimentHiContactsOHCA

Generating fragment density plots in R/Bioconductor with VplotR

Serizay, and Ahringer

Journal of Open Source Software•DOI•PDF

SoftwareVplotR

periodicDNA: an R/Bioconductor package to investigate k-mer periodicity in DNA

Serizay, and Ahringer

F1000 Research•DOI•PDF

SoftwareperiodicDNA

Distinctive regulatory architectures of germline-active and somatic genes in C. elegans

Serizay, Dong, Jänes, Chesney, Cerrato, and Ahringer

Genome Research•DOI•PDF•Supp.

A protein assembly mediates Xist localization and gene silencing

Pandya-Jones, Markaki, Serizay, Chitiashvili, Mancia Leon, Damianov, et al.

Nature•DOI•PDF•Supp.

Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion

Athie, Marchese, González, Lozano, Raimondi, Juvvuna, et al.

Journal of Cell Biology•DOI•PDF

Chromatin accessibility dynamics across C. elegans development and ageing

Jänes † & Dong †, Schoof ‡ & Serizay ‡, Appert, Cerrato, et al.

eLife•DOI•PDF•Supp.

Genome organization at different scales: nature, formation and function

Serizay, and Ahringer

Current Opinion in Cell BiologyReview•DOI•PDF