# Write Quarto books with Bioconductor

> This package has been created using the BiocBook package. It serves as a demo of a `BiocBook` online book. Read `BiocBook` package documentation to know more about BiocBooks.

<!-- biocbook:start -->
- Book package: `BiocBookDemo` 1.11.5 (Bioconductor 3.24), source: <https://github.com/js2264/BiocBookDemo>
- Install: `BiocManager::install("BiocBookDemo")` (Bioconductor) or `BiocManager::install("js2264/BiocBookDemo")` (GitHub)
- Docker image with every dependency: `docker run -it ghcr.io/js2264/biocbookdemo:1.11.5 R`
- Python environment (conda): `python=3.12`, `numpy=1.26`, `matplotlib=3.8`, `deeptools`, provisioned by `BiocBook::setup_python()` from `inst/requirements.yml`
- Other versions of this book: one per Bioconductor release, at `https://js2264.github.io/BiocBookDemo/<version>/` (e.g. <https://js2264.github.io/BiocBookDemo/devel/>), indexed in <https://js2264.github.io/BiocBookDemo/llms.txt>
<!-- biocbook:end -->

## Pages

- [Write Quarto books with Bioconductor](index.llms.md)
- [Preamble](pages/preamble.llms.md)
- [1 `BiocBook` versioning system](pages/Chapter-1.llms.md)
- [2 Writing a {`BiocBook`} package](pages/Chapter-2.llms.md)
- [3 Containerizing and Publishing against specific Bioconductor release versions](pages/Chapter-3.llms.md)
- [4 Executing `python` code](pages/Chapter-4.llms.md)
- [5 {`BiocBook`}-based books vs. {`rebook`}-based books](pages/biocbook-vs-rebook.llms.md)