plyinteractions: a grammar of data manipulation for genomic interactions

plyinteractions is a dplyr-like API to the GInteractions infrastructure in Bioconductor.

Details

plyinteractions provides a consistent interface for importing and wrangling genomic interactions from a variety of sources. The package defines a grammar of genomic interactions manipulation through a set of verbs. These verbs can be used to construct human-readable analysis pipelines based on GInteractions.

• Group genomic interactions with group_by;

• Summarize grouped genomic interactions with summarize;

• Tally/count grouped genomic interactions with tally and count;

• Modify genomic interactions with mutate;

• Subset genomic interactions with filter using <data-masking> and logical expressions;

• Pick out any columns from the associated metadata with select using <tidy-select> arguments;

• Subset using indices with slice;

• Order genomic interactions with arrange using categorical/numerical variables.

  For more details on the features of plyinteractions, read the vignette: browseVignettes(package = "plyinteractions")

See also

Useful links:

• https://github.com/js2264/plyinteractions

• Report bugs at https://github.com/js2264/plyinteractions/issues

Author

Maintainer: Jacques Serizay jacquesserizay@gmail.com